超嗜热古菌Thermococcus eurythermalis A501编码B家族DNA聚合酶的生化特性及PCR应用
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国家重点研发计划项目(2018YFC0310704)


Characterization of a family B DNA polymerase from Thermococcus eurythermalis A501 and its application in PCR
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    摘要:

    DNA聚合酶广泛应用于PCR技术,在生命科学研究及相关领域发挥重要作用。但目前商业化DNA聚合酶仍不能完全满足科研需要,有必要寻求高性能DNA聚合酶。文中克隆表达了超嗜热古菌(Thermococcus eurythermalis) A501来源的B家族DNA聚合酶基因(NCBI数据库基因登录号为TEU_RS04875)、表征该重组蛋白的生化特性、评价了其PCR应用。将删除intein蛋白序列的DNA聚合酶(Teu-PolB)进行体外重组表达,经亲和层析和离子交换层析纯化获得Teu-PolB蛋白;利用5'端带荧光标记的寡核苷酸作为底物,用尿素变性聚丙烯酰胺凝胶电泳鉴定Teu-PolB的生化特性;以噬菌体λDNA基因组为模板,探究Teu-PolB的PCR应用。结果显示,Teu-PolB具有DNA聚合酶活性和3'→5'核酸外切酶活性,该酶在98℃下的半衰期约为2 h,热稳定性高。使用Teu-PolB进行PCR扩增,最适PCR缓冲液为50 mmol/L Tris-HCl pH 8.0,2.5 mmol/L MgCl2,60 mmol/L KCl,10 mmol/L (NH42SO4,0.015% Triton X-100和0.01% BSA,最适延伸温度为68℃。此外,Teu-PolB能在2 kb/min条件下成功扩增4 kb目的片段,扩增产量弱于商品化Taq DNA聚合酶,优于Pfu DNA聚合酶,但扩增速率和保真度优于TaqPfu DNA聚合酶,且对盐的耐受性较高。综上所述,本研究鉴定了一种高保真DNA聚合酶Teu-PolB的生化特性,结果表明该酶可应用于PCR扩增,具有热稳定性高、耐盐性能好、扩增速率高、保真度高等特征。

    Abstract:

    DNA polymerases are widely used in PCR and play important roles in life science research and related fields. Development of high-performance DNA polymerases is of great commercial interest as the current commercial DNA polymerases could not fully satisfy the requirements of scientific research. In this study, we cloned and expressed a family B DNA polymerase (NCBI accession number TEU_RS04875) from Thermococcus eurythermalis A501, characterized its enzymatic property and evaluated its application in PCR. The recombinant Teu-PolB was expressed in E. coli and purified with affinity chromatography and ion-exchange chromatography. The enzymatic properties of Teu-PolB were characterized using fluorescence-labeled oligonucleotides as substrates. The application potential of Teu-PolB in PCR was evaluated using the phage λ genomic DNA as a template. Teu-PolB has DNA polymerase and 3'→5' exonuclease activities, and is highly thermostable with a half-life of 2 h at 98℃. The most suitable PCR buffer is consisted of 50 mmol/L Tris-HCl pH 8.0, 2.5 mmol/L MgCl2, 60 mmol/L KCl, 10 mmol/L (NH4)2SO4, 0.015% Triton X-100 and 0.01% BSA, and the optimal extension temperature is 68℃. Under the optimized conditions, a 4 kb target fragment was successfully amplified with an extension rate of 2 kb/min. The yield of the Teu-PolB amplified-DNA was lower than that of Taq DNA polymerase, but its extension rate and fidelity was higher than that of Taq and Pfu DNA polymerases. The biochemical properties of Teu-PolB demonstrate that this enzyme can be used in PCR amplification with high thermostability, good salt tolerance, high extension rate and high fidelity.

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翁妍,刘喜朋. 超嗜热古菌Thermococcus eurythermalis A501编码B家族DNA聚合酶的生化特性及PCR应用[J]. 生物工程学报, 2022, 38(2): 807-819

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  • 收稿日期:2021-01-05
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  • 在线发布日期: 2022-02-25
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