微生物学通报  2023, Vol. 50 Issue (3): 1281−1290

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文章信息

许莹, 董胜男, 张青阳, 何浩洋, 张部昌, 刘静
XU Ying, DONG Shengnan, ZHANG Qingyang, HE Haoyang, ZHANG Buchang, LIU Jing
植物毒素thaxtomins生物合成及其分子调控研究进展
Biosynthesis and molecular regulation of phytotoxin thaxtomins: a review
微生物学通报, 2023, 50(3): 1281-1290
Microbiology China, 2023, 50(3): 1281-1290
DOI: 10.13344/j.microbiol.china.220528

文章历史

收稿日期: 2022-05-28
接受日期: 2022-07-27
网络首发日期: 2022-09-06
植物毒素thaxtomins生物合成及其分子调控研究进展
许莹1 #, 董胜男1 #, 张青阳1 , 何浩洋1 , 张部昌2 , 刘静1     
1. 安徽农业大学生命科学学院, 安徽  合肥    230036;
2. 安徽大学物质科学与信息技术研究院, 安徽  合肥    230601
摘要: 马铃薯疮痂病(potato scab)是世界范围内广泛存在的土传细菌性病害,难以防治。植物毒素thaxtomins由疮痂病链霉菌(Streptomyces scabies)次级代谢产生,是马铃薯疮痂病的主要致病原因,对马铃薯等作物产业造成严重危害。鉴于疮痂病链霉菌在农业上的重要作用,其中thaxtomins生物合成过程和分子调控得到越来越多的关注,并取得了较好的进展。本文综述了thaxtomins的结构特征、生物合成与异源表达,并重点介绍了疮痂病链霉菌中thaxtomins生物合成的分子调控机制等方面的研究进展,有利于深入认知疮痂病链霉菌次级代谢调控网络,为未来开发新型马铃薯疮痂病的防治策略提供理论指导。
关键词: 马铃薯疮痂病    疮痂病链霉菌    thaxtomins    生物合成    调控机制    
Biosynthesis and molecular regulation of phytotoxin thaxtomins: a review
XU Ying1 #, DONG Shengnan1 #, ZHANG Qingyang1 , HE Haoyang1 , ZHANG Buchang2 , LIU Jing1     
1. School of Life Sciences, Anhui Agricultural University, Hefei 230036, Anhui, China;
2. Institution of Physical Science and Information Technology, Anhui University, Hefei 230601, Anhui, China
Abstract: Potato scab, a soil-borne bacterial disease that exists worldwide, is difficult to control. The phytotoxin thaxtomins, produced by the secondary metabolism of Streptomyces scabies, are the main cause of potato scab, and result in serious damage to potato and other crop industries. Due to the serious impact of S. scabies on agriculture, the biosynthesis and molecular regulation of thaxtomins have attracted many attentions and made great progress. This article reviewed the structural characteristics, biosynthesis, and heterologous expression of thaxtomins, focusing on the molecular regulatory mechanism of thaxtomins biosynthesis in S. scabies. This review helps deeply understand the regulatory network of the secondary metabolism of S. scabies, and provides theoretical guidance for the development of new control strategies for potato scab in the future.
Keywords: potato scab    Streptomyces scabies    thaxtomins    biosynthesis    regulatory mechanism    

疮痂病链霉菌是引起马铃薯疮痂病的主要致病菌之一,自疮痂病发生以来,其对马铃薯的危害及整个马铃薯产业的影响受到了广泛的关注。随着国内外研究者对疮痂病病原、致病毒素和防治等方面的研究逐步深入,目前已取得了较好的研究进展[1-3]。已报道的马铃薯疮痂病菌有20余种,最常见的是疮痂病链霉菌(Streptomyces scabies)、酸性疮痂病链霉菌(Streptomyces acidiscabies)和肿痂链霉菌(Streptomyces turgidiscabies),其中疮痂病链霉菌是马铃薯疮痂病的主要致病菌,能通过皮孔、伤口或幼嫩的块茎进入组织,产生次级代谢物thaxtomins,thaxtomins通过阻断植物细胞扩张和分裂过程中纤维素的合成而引发疮痂病。疮痂病的症状包括块茎表面结痂状、隆起或凹陷性病变,严重影响马铃薯的产量和质量,导致巨大的经济损失[4-5]。除马铃薯外,疮痂病链霉菌还能侵染萝卜、甜菜、胡萝卜等主要作物,甚至包括中药植物防风草[6]

鉴于疮痂病链霉菌在农业上的重要影响,其中thaxtomins生物合成过程的分子调控得到越来越多的关注,并取得了较好的进展[3-4, 7-9]。本文综述了thaxtomins的结构特征、生物合成基因簇和生物合成途径,并重点介绍了疮痂病链霉菌中thaxtomins生物合成的分子调控机制等方面的研究进展,有利于深入认知疮痂病链霉菌次级代谢调控网络和马铃薯疮痂病的致病机理,以期为将来开发新型马铃薯疮痂病的防治策略提供理论指导。

1 Thaxtomins的结构性质及应用

Thaxtomins是一类由疮痂病链霉菌及少数其他病原链霉菌产生、具有独特2, 5-二酮哌嗪结构的化合物,依据二酮哌嗪主链上特定位置是否存在N-甲基和羟基,可将thaxtomins家族分为thaxtomin A、B、C和D等共计11个结构类似物[4, 10]。Thaxtomin A是thaxtomins家族中代谢量最多、活性最显著且结构最具代表性的产物,于1989年首次分离于感染疮痂病的马铃薯切片中[11],因此,thaxtomin A在农业上可作为筛选剂用于筛选具有抗疮痂病的马铃薯品种。Thaxtomin A的特征结构单元是l-4-硝基吲哚和C-羟基-哌嗪二酮环[12] (图 1),其中l-4-硝基吲哚为thaxtomins家族在所有微生物次级代谢产物中所独有的化学结构单元,C-羟基-哌嗪二酮环则存在很多具有生物活性的天然产物[4]。由于thaxtomins家族化合物具有非常显著的抑制植物纤维合成酶的活性[13-15],因此可作为植物毒素在纳摩尔水平抑制常见双子叶和单子叶杂草的生长,是一类具有良好活性和巨大潜力的新型天然除草剂[16-18]。不同结构的thaxtomin能够抑制植物纤维合成酶的活性则不同,因而呈现出不同的植物毒性,其中thaxtomin A的活性最强[13-15]。然而thaxtomin A具体的分子模型和特异靶点目前并不清楚[13-15]

图 1 Thaxtomin A及其主要结构类似物的化学结构[12] Figure 1 Chemical structures of thaxtomin A and its analogues[12].
2 Thaxtomins的生物合成 2.1 Thaxtomins生物合成基因簇

引起马铃薯疮痂病的疮痂病链霉菌、酸性疮痂病链霉菌和肿痂链霉菌等都能够通过次级代谢产生thaxtomins家族化合物,原因在于负责thaxtomin A及其结构类似物的生物合成基因簇(thaxtomin biosynthetic gene cluster, txt cluster)具有高度保守性[19]。整个txt cluster是由txtCtxtHtxtBtxtAtxtRtxtEtxtD共计7个基因依次排列组成的,长度大约为18.3 kb,共计包括3个转录单元:txtA-txtB-txtH-txtCtxtE-txtDtxtR[19] (图 2)。其中,txtR编码AraC/XylS家族转录调控蛋白[20],剩余6个基因分别编码thaxtomin生物合成各步骤所需的催化酶:txtAtxtB分别编码非核糖体肽合成酶(non-ribosomal peptide synthetase, NRPS)[21]txtC编码细胞色素P450单加氧酶(cytochrome P450, CYP450)[22]txtD编码一氧化氮合酶[23]txtE编码一种独特的CYP450[24-25]txtH编码MbtH样蛋白家族的小分子蛋白[26]

图 2 疮痂病链霉菌thaxtomins生物合成基因簇及共转录单元示意图 Figure 2 Genetic organization and co-transcriptional unit of gene cluster for the biosynthesis of thaxtomins in Streptomyces scabies.
2.2 Thaxtomins生物合成途径

Thaxtomins生物合成途径并不烦琐复杂,首先从两个简单的氨基酸:l-色氨酸(l-tryptophan, Trp)和l-精氨酸(L-arginine, Arg)开始,Arg经一氧化氮合酶TxtD氧化生成瓜氨酸和一氧化氮(nitric oxide, NO)[23];然后,Trp经独特的CYP450 TxtE和NO催化生成l-4-硝基色氨酸,TxtE是目前已知的唯一能够直接硝化碳氢键的酶[24-25];接着,l-4-硝基色氨酸和另一氨基酸l-苯丙氨酸(l-phenylalanine, Phe)分别经非核糖体肽合成酶TxtB和TxtA催化,并连接形成具有2, 5-二酮哌嗪结构的thaxtomin D[21, 27];最后,thaxtomin D经CYP450 TxtC催化后引入两个羟基至分子骨架上而生成最终的thaxtomin A[22, 26, 28-29] (图 3)。目前关于MbtH样家族蛋白TxtH对thaxtomins生物合成的作用机制并不十分清晰,已有研究表明,疮痂病链霉菌中TxtH与thaxtomin A生物合成产量之间存在显著的正相关性,作用机制可能是TxtH发挥分子伴侣作用而促进TxtA和TxtB两个蛋白的正确折叠[26, 30]

图 3 疮痂病链霉菌中thaxtomin A生物合成途径示意图[26] Figure 3 The proposed biosynthetic pathway of thaxtomin A in Streptomyces scabies[26].
2.3 Thaxtomins生物合成基因簇异源表达

Thaxtomin A作为天然除草剂在农业上具有巨大的开发潜力,然而thaxtomin A在本源链霉菌宿主中的产量却非常低,限制了其广泛推广应用[10]。对目标化合物进行异源表达,改变遗传背景能够有效地提高目标化合物的产量。例如,Jiang等[31]将疮痂病链霉菌87.22中txt cluster克隆至白色链霉菌(Streptomyces albus) J1074中进行异源表达,成功将thaxtomin A在摇瓶水平上的产量从9 mg/L提高至91 mg/L;近期,Li等再次通过异源表达策略将txt cluster克隆至5个常用的链霉菌异源表达宿主,其中微白黄链霉菌(Streptomyces albidoflavus) J1074中thaxtomin A的产量最高,继而选择微白黄链霉菌作为异源宿主对thaxtomin A进行代谢工程系列改造,最终将thaxtomin A在摇瓶水平上的产量提高至728 mg/L[12]S. albusS. albidoflavus在常用链霉菌中具有较小规模的基因组,因此,利用其进行thaxtomin A的合成时能够减少其他竞争途径而使thaxtomin A的合成量提高。

3 Thaxtomins生物合成的调控

Thaxtomins生物合成过程中受关键转录调控因子的调控,包括途径特异性转录调控和全局多效调控,而这些转录调控因子在疮痂病链霉菌的初级代谢和次级代谢中起着至关重要的作用。

3.1 途径特异性转录调控

TxtR是thaxtomins生物合成基因簇内唯一的簇内专一性调控因子(cluster-situated regulator, CSR),能够激活thaxtomins生物合成基因簇的表达[20]。疮痂病链霉菌87.22缺失txtR基因后,菌株不再产生thaxtomins化合物,对烟草幼苗的毒力作用几乎消失,而且txtAtxtBtxtC等生物合成基因的表达明显下降,说明TxtR对thaxtomins生物合成具有显著的转录激活作用[20] (图 4)。TxtR能够结合其配体分子纤维二糖(cellobiose),纤维二糖是纤维素的基本结构单元,由两个葡萄糖通过β-1, 4-糖苷键连接而形成[20]。当纤维二糖存在时,txtR和thaxtomins生物合成基因的转录水平均得到大幅提升,因而纤维二糖可作为thaxtomins生物合成的诱导剂[20]。TxtR是AraC/XylS家族蛋白中第一个受到纤维二糖调节的成员[20, 32]

图 4 疮痂病链霉菌中TxtR和CebR调控thaxtomins生物合成的模式 Figure 4 Regulatory mode of TxtR and CebR on thaxtomins biosynthesis in Streptomyces scabies.
3.2 全局多效调控

3.2.1 Bld家族蛋白

bld基因家族在链霉菌次级代谢和形态分化的过程中具有非常重要的调控意义,包括bldA (tRNA)、bldK (ABC转运系统)、bldN (σ factor)、bldG (anti-anti-σ factor)及bldB/bldC/bldD/bldH/ bldM (转录调控因子)[33-34]。Bignell等在疮痂病链霉菌中通过对9个bld家族同源基因进行缺失研究(表 1),发现突变株ΔbldA和ΔbldC中thaxtomin A的生物合成均被完全阻断,检测不到thaxtomin A的产量;突变株ΔbldD、ΔbldG和ΔbldH中thaxtomin A的产量也显著低于原始菌株;而突变株ΔbldB、ΔbldKA和ΔbldN中thaxtomin A的产量却有不同程度的提高[35]。通过毒力实验分析这些bld基因缺失突变株对萝卜幼苗和马铃薯块茎的致病情况发现,ΔbldB、ΔbldKA和ΔbldN的致病表型相似于出发菌株;而ΔbldA、ΔbldC、ΔbldD、ΔbldG和ΔbldH的致病表型如组织坏死或根茎发育迟缓等情况,相较于出发菌株均有明显减少,这与各突变株中thaxtomin A的含量相一致(表 1)[35]。再通过实时荧光定量聚合酶链式反应(real-time fluorescence quantitative polymerase chain reaction, RT-qPCR)分析ΔbldA、ΔbldC、ΔbldD、ΔbldG和ΔbldH这5个突变株中thaxtomin生物合成相关基因的转录情况发现,各突变株中txtAtxtD的表达量均显著下降;而txtR的表达量在ΔbldH中无明显变化,在其他突变株中均显著下降[35]

表 1 疮痂病链霉菌中bld家族同源基因信息与功能 Table 1 Information and function of bld family genes in Streptomyces scabies
Gene Protein Predicted function Phenotype of gene mutant in S. scabies
scab54521 BldA Leucyl tRNA Thaxtomin A production abolished
scab25271 BldB Small DNA binding protein Thaxtomin A production increased
scab47901 BldC MerR-type DNA binding protein Thaxtomin A production abolished
scab75171 BldD DNA binding transcriptional regulator Thaxtomin A production decreased
scab40861 BldG Anti-anti-sigma factor Thaxtomin A production decreased
scab57831 BldH AraC/XylS family transcriptional regulator Thaxtomin A production decreased
scab31541 BldKA ABC transport system integral membrane protein Thaxtomin A production slightly increased
scab36231 BldM Orphan response regulator This mutant was not studied
scab39121 BldN Extracytoplasmic function sigma factor Thaxtomin A production increased

BldB[36]、BldC[37]、BldD[38-40]和BldH[41]作为典型的转录调控因子,已知能够调控thaxtomin生物合成基因和CSR基因的表达,然而更加深入的调控机制并不清楚。例如,BldB、BldC、BldD和BldH对thaxtomin生物合成基因和CSR基因的调控作用是直接还是间接,具体的结合位点是否与其他链霉菌中已鉴定的保守结合位点一致,BldD在疮痂病链霉菌中行使功能是否同样依赖于第二信使c-di-GMP的介导作用等。

3.2.2 LacI/GalR家族转录调控因子CebR

CebR是链霉菌中调控纤维素转化利用的转录抑制因子,属于LacI/GalR家族蛋白[42-43]。2015年,Francis等在疮痂病链霉菌中利用PREDetector软件预测得到txtA-txtR基因间隔区中存在一段与CebR保守结合位点高度相似的回文序列(命名为cbstxtR-A:5ʹ-CGGGAGCGCTCCCA-3ʹ),EMSA分析发现CebR蛋白的确能够与cbstxtR-A结合,并特异性应答其配体分子纤维二糖和纤维三糖(cellotriose)[44-45];疮痂病链霉菌中cebR (scab57761)基因缺失后,txt cluster中生物合成基因txtAtxtB及CSR基因txtR的转录水平显著提高,thaxtomin A的产量大幅度提升10倍以上,而且ΔcebR突变株对拟南芥和马铃薯的致病活性也明显增强,说明疮痂病链霉菌CebR对thaxtomin A的生物合成具有直接的转录抑制作用(图 4)[44]。2016年,Jourdan等发现疮痂病链霉菌CebR调控thaxtomins生物合成的另一路径:cebEFG是与cebR位置相邻且转录方向相反的操纵子,编码负责纤维二糖和纤维三糖吸收利用的相关转运蛋白(CebEFG-MsiK ABC转运蛋白系统),其中CebE已被证实能够直接结合纤维二糖和纤维三糖[46-48];疮痂病链霉菌中cebE (scab57751)基因缺失后,thaxtomin A的产量大幅度下降,ΔcebE突变株对萝卜苗的致病活性也明显减弱;RT-qPCR分析发现ΔcebR突变株中cebEcebF的表达水平显著提高,进一步EMSA分析发现CebR蛋白能够直接结合cebEFG启动子DNA并特异性应答纤维二糖分子,而且cebEFG启动子序列具有14 bp的CebR保守结合位点,说明CebR能够通过直接调控cebEFG转运蛋白基因的表达介导纤维二糖和纤维三糖的吸收过程,而最终影响thaxtomin A的生物合成(图 4)[46]。2018年,Jourdan等[49]再进一步发现CebR能够直接调控其上游非邻近的bglC (scab57721)基因的功能,bglC基因编码一种β-葡萄糖苷酶(又称纤维二糖酶),属糖基水解酶GH1家族蛋白,能够水解结合于末端非还原性的β-葡萄糖苷键,同时释放出β-葡萄糖和相应的配基;CebR通过直接作用于bglC启动子区保守结合位点cbsbglC而调控bglC的转录,而且CebR对bglC的转录抑制作用同样应答其配体分子纤维二糖;遗传学分析证实bglC基因的缺失能够引起疮痂病链霉菌在不同碳源情况下thaxtomin A产量和致病活性的相应变化,说明CebR还能够通过直接调控BglC介导的葡萄糖水解途径而影响thaxtomin A的生物合成(图 4)。

4 总结与展望

马铃薯疮痂病是制约全世界马铃薯产业积极向好发展的重要因素,其致病菌次级代谢产生的毒素thaxtomins危害马铃薯块茎表面,对马铃薯和其他重要作物的生产种植都具有严重影响[4-6]。本文聚焦于thaxtomins生物合成过程和分子调控机制的研究,从途径特异性调控和全局多效调控的角度阐述thaxtomins生物合成的关键调控因子。一方面有利于在理论上全面深刻地认知毒素thaxtomins生物合成的分子调控网络,为未来通过代谢调控的策略防治疮痂病的发生提供新的方向;另一方面,有利于挖掘开发相关转录调控元件结合高效的代谢工程手段进行thaxtomin A高产设计,为thaxtomin A作为新型天然除草剂在农业上的广泛应用提供理论支持。例如,Li等通过代谢工程手段将thaxtomin A生物合成基因簇txt cluster克隆至微白黄链霉菌J1074中异源表达,结合转录抑制因子CebR失活和启动子优化等联合策略的改造,最终将thaxtomin A的产量在小型发酵罐水平上提高至1 973 mg/L,这是截至目前已报道的thaxtomin A合成产量的最高水平[12]

目前,疮痂病链霉菌及其代谢产物thaxtomins生物合成的分子调控研究虽然取得了一定的进展,但是相对于其他研究较为成熟的模式链霉菌如天蓝色链霉菌(Streptomyces coelicolor)[33, 50]和委内瑞拉链霉菌(Streptomyces venelazue)[51-52]等,其次级代谢的分子调控机制研究还不够深入,很多问题尚不清晰。例如,TxtR作为thaxtomins生物合成基因簇唯一的途径特异性调控因子[20],其精确的作用靶点和转录激活的机制有待深入解析,TxtR能够应答配体分子纤维二糖,具体应答机制如何,以及是否与CebR应答纤维二糖的模式相同等;又如已知BldB、BldC、BldD和BldH能够调控thaxtomin生物合成基因和CSR基因的表达[35],然而BldB、BldC、BldD和BldH对thaxtomin生物合成基因和CSR基因的调控作用是直接还是间接,具体的结合位点是否与其他链霉菌中已鉴定的保守结合位点一致,BldD在疮痂病链霉菌中行使功能是否同样依赖于第二信使c-di-GMP的介导作用等。这些问题都有待研究者们深入地探讨解析。

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